MI Publications

Divine, C., Justicia‐León, S., Tilton, J. M., Liles, D., Carter, E., Zardouzian, E., Clark, K., & Taggart, D., Freedman, D., LaRaiai, S., Perrell, F., & Gerber, K.  Min-Trap® Samplers to Passively Monitor In-Situ Iron Sulfide Mineral Formation for Chlorinated Solvent Treatment Groundwater Monitoring & Remediation 2023, https://doi.org/10.1111/gwmr.12595

Divine, C., Justicia‐León, S., Tilton, J. M., Carter, E., Zardouzian, E., Clark, K., & Taggart, D.  Field methods and example applications for the Min‐Trap® mineral sampler. Remediation 2023, 1-8.

Madison AS, Sorsby SJ, Wang Y and Key TA  Increasing in situ bioremediation effectiveness through field-scale application of molecular biological tools.  Frontiers in Microbiology 2023, 13:1005871.

Taggart, D. M., & Clark, K., Lessons learned from 20 years of molecular biological tools in petroleum hydrocarbon remediation. Remediation 2021, 31, (4), 83-95.

Ulrich, S.; Tilton, J.M.; Justicia-Leon, S.; Liles, D.; Prigge, R.; Carter, E.; Divine, C.; Taggart, D.; Clark, K., Laboratory and initial field testing of the Min‐Trap™ for tracking reactive iron sulfide mineral formation during in situ remediation. Remediation 2021, 31, (3), 35-48.

Kaya, D.; Kjellerup, B. V.; Chourey, K.; Hettich, R. L.; Taggart, D. M.; Löffler, F. E.Impact of Fixed Nitrogen Availability on Dehalococcoides mccartyi Reductive Dechlorination Activity. Environmental Science & Technology 2019, 53, (24), 14548-14558.

Rossmassler, K.; Snow, C. D.; Taggart, D.; Brown, C.; De Long, S. K.Advancing biomarkers for anaerobic o-xylene biodegradation via metagenomic analysis of a methanogenic consortium. Applied Microbiology and Biotechnology 2019, 103, (10), 4177-4192.

Wilson, J. T.; Mills IV, J. C.; Wilson, B. H.; Ferrey, M. L.; Freedman, D. L.; Taggart, D.Using qPCR Assays to Predict Rates of Cometabolism of TCE in Aerobic Groundwater. Groundwater Monitoring & Remediation 2019, 39, (2), 53-63.

Clark, K.; Taggart, D. M.; Baldwin, B. R.; Ritalahti, K. M.; Murdoch, R. W.; Hatt, J. K.; Löffler, F. E.Normalized Quantitative PCR Measurements as Predictors for Ethene Formation at Sites Impacted with Chlorinated Ethenes. Environmental Science & Technology 2018, 52, (22), 13410-13420.

Baldwin, B. R.; Taggart, D.; Chai, Y.; Wandor, D.; Biernacki, A.; L. Sublette, K.; T. Wilson, J.; Walecka-Hutchison, C.; Coladonato, C.; Goodwin, B., Bioremediation Management Reduces Mass Discharge at a Chlorinated DNAPL Site. Groundwater Monitoring & Remediation 2017, 37, (2), 58-70.

Burns, M.; Carstens, D.; Ghosh, E.; Lewis, R.; Zajdlik, J.; Bakenne, A. M.; De Tilly, R. N.Thinking Outside the Boxcar: Effective and Sustainable Combined Remedies Using Single Application of Multifunctional Amendments. Groundwater Monitoring & Remediation 2017, 37, (1), 42-50.

Hatzinger, P. B.; Lewis, C.; Webster, T. S.Biological treatment of N-nitrosodimethylamine(NDMA) and N-nitrodimethylamine (NTDMA) in a field-scale fluidized bed bioreactor. Water Research 2017, 126, 361-371.

Yang, Y.; Higgins, S. A.; Yan, J.; Şimşir, B.; Chourey, K.; Iyer, R.; Hettich, R. L.; Baldwin, B.; Ogles, D. M.; Löffler, F. E.Grape pomace compost harbors organohalide-respiring Dehalogenimonas species with novel reductive dehalogenase genes. The ISME Journal 2017, 11, (12), 2767-2780.

Nobre, R. C. M.; Nobre, M. M. M.; Campos, T. M. P.; Ogles, D., In-situ biodegradation potential of 1,2-DCA and VC at sites with different hydrogeological settings. Journal of Hazardous Materials 2017, 340, 417-426.

Baird, C.; Ogles, D.; Baldwin, B. R., Molecular Microbiological Methods to Investigate Microbial Influenced Corrosion in Fully Integrated Kraft Pulp and Paper Mills. In CORROSION 2016, NACE International: Vancouver, British Columbia, Canada, 2016; p 11.

Bell, C.; McDonough, J.; Houston, K. S.; Gerber, K., Stable Isotope Probing to Confirm Field-Scale Co-Metabolic Biodegradation of 1,4-Dioxane. Remediation 2016, 27, (1), 47-59.

Baldwin, B. R.; Ogles, D.; Nakatsu, C. H.Monitoring Microbial Community Dynamics to Evaluate Bioremediation. In Biodegradative Bacteria: How Bacteria Degrade, Survive, Adapt, and Evolve, Nojiri, H.; Tsuda, M.; Fukuda, M.; Kamagata, Y., Eds. Springer Japan: Tokyo, 2014; pp 293-312.

Borden, R. C.; Knox, S. L.; Lieberman, M. T.; Ogles, D., Perchlorate natural attenuation in a riparian zone. Journal of Environmental Science and Health, Part A 2014, 49, (10), 1100-1109.

Gedalanga, P. B.; Pornwongthong, P.; Mora, R.; Chiang, S.-Y. D.; Baldwin, B.; Ogles, D.; Mahendra, S., Identification of Biomarker Genes To Predict Biodegradation of 1,4-Dioxane. Applied and Environmental Microbiology 2014, 80, (10), 3209-3218.

Key, K. C.; Sublette, K. L.; Johannes, T. W.; Ogles, D.; Baldwin, B.; Biernacki, A., Assessing BTEX Biodegradation Potential at a Refinery Using Molecular Biological Tools. Groundwater Monitoring & Remediation 2014, 34, (1), 35-48.

Sublette, K.; Ogles, D.; Baldwin, B.; Clark, K.; Eckert, R.Molecular Analysis of Aramid Polymer Film Impressions of Corrosion Coupon Biofilms. In CORROSION 2014, NACE International: San Antonio, Texas, USA, 2014; p 11.

Burns, M.; Sublette, K. L.; Sobieraj, J.; Ogles, D.; Koenigsberg, S.,Concurrent and Complete Anaerobic Reduction and Microaerophilic Degradation of Mono-, Di-, and Trichlorobenzenes.  Remediation 2013, 23, (3), 37-53.

Hatt, J. K.; Ritalahti, K. M.; Ogles, D. M.; Lebrón, C. A.; Löffler, F. E.Design and Application of an Internal Amplification Control to Improve Dehalococcoides mccartyi 16S rRNA Gene Enumeration by qPCR. Environmental Science & Technology 2013, 47, (19), 11131-11138.

Key, K. C.; Sublette, K. L.; Duncan, K.; Mackay, D. M.; Scow, K. M.; Ogles, D.Using DNA-Stable Isotope Probing to Identify MTBE- and TBA-Degrading Microorganisms in Contaminated Groundwater. Groundwater Monitoring & Remediation 2013, 33, (4), 57-68.

Key, K. C.; Sublette, K. L.; Johannes, T. W.; Raes, E.; Sullivan, E.; Duba, J.; Ogles, D.; Baldwin, B. R.; Biernacki, A.An In Situ Bioreactor for the Treatment of Petroleum Hydrocarbons in Groundwater. Remediation 2013, 23, (3), 55-84.

Williams, N.; Hyland, A.; Mitchener, R.; Sublette, K.; Key, K. C.; Davis, G.; Ogles, D.; Baldwin, B.; Biernacki, A., Demonstrating the In Situ Biodegradation Potential of Phenol Using Bio-Sep® Bio-Traps® and Stable Isotope Probing. Remediation 2013, 23, (1), 7-22.

Chiang, S.-Y. D.; Mora, R.; Diguiseppi, W. H.; Davis, G.; Sublette, K.; Gedalanga, P.; Mahendra, S.Characterizing the intrinsic bioremediation potential of 1,4-dioxane and trichloroethene using innovative environmental diagnostic tools. Journal of Environmental Monitoring 2012, 14, (9), 2317-2326.

Tamppari, L. K.; Anderson, R. M.; Archer, P. D., Jr.; Douglas, S.; Kounaves, S. P.; McKay, C. P.; Ming, D. W.; Moore, Q.; Quinn, J. E.; Smith, P. H.; Stroble, S.; Zent, A. P., Effects of extreme cold and aridity on soils and habitability: McMurdo Dry Valleys as an analogue for the Mars Phoenix landing site. Antarctic Science 2012, 24, (3), 211-228.

Baldwin, B. R.; Biernacki, A.; Blair, J.; Purchase, M. P.; Baker, J. M.; Sublette, K.; Davis, G.; Ogles, D., Monitoring Gene Expression To Evaluate Oxygen Infusion at a Gasoline-Contaminated Site. Environmental Science & Technology 2010, 44, (17), 6829-6834.

Burns, M.; Myers, C.Evolution of predictive tools for in situ bioremediation and natural attenuation evaluations. Remediation 2010, 20, (4), 5-16.

Chandler, D. P.; Kukhtin, A.; Mokhiber, R.; Knickerbocker, C.; Ogles, D.; Rudy, G.; Golova, J.; Long, P.;  Monitoring Microbial Community Structure and Dynamics during in situ U(VI) Bioremediation with a Field-Portable Microarray Analysis System. Environmental Science & Technology 2010, 44, (14), 5516-5522.

Istok, J. D.; Park, M.; Michalsen, M.; Spain, A. M.; Krumholz, L. R.; Liu, C.; McKinley, J.; Long, P.; Roden, E.; Baldwin, B.A thermodynamically-based model for predicting microbial growth and community composition coupled to system geochemistry: Application to uranium bioreduction. Journal of Contaminant Hydrology 2010, 112, (1), 1-14.

Ritalahti, K. M.; Hatt, J. K.; Lugmayr, V.; Henn, K.; Petrovskis, E. A.; Ogles, D. M.; Davis, G. A.; Yeager, C. M.; Lebrón, C. A.; Löffler, F. E.Comparing On-Site to Off-Site Biomass Collection for Dehalococcoides Biomarker Gene Quantification To Predict in Situ Chlorinated Ethene Detoxification Potential. Environmental Science & Technology 2010, 44, (13), 5127-5133.

Baldwin, B. R.; Park, M.; Ogles, D. M.; Istok, J. D.; McKinley, J. P.; Resch, C. T.; White, D. C., Multilevel Samplers as Microcosms to Assess Microbial Response to Biostimulation. Groundwater 2008, 46, (2), 295-304.

Busch-Harris, J.; Sublette, K.; Roberts, K. P.; Landrum, C.; Davis, G.; Ogles, D.; Holmes, W. E.; Harris, D.; Ota, C.; Yang, X.; Kolhatkar, A.Bio-Traps Coupled with Molecular Biological Methods and Stable Isotope Probing Demonstrate the In Situ Biodegradation Potential of MTBE and TBA in Gasoline-Contaminated Aquifers. Groundwater Monitoring & Remediation 2008, 28, (4), 47-62.

Davis, G.; Baldwin, B. R.; Ogles, D.; White, G. M.; Boyle, S. L.; Raes, E.; Koenigsberg, S. S.; Sublette, K. L.Integrated approach to PCE-impacted site characterization, site management, and enhanced bioremediation. Remediation 2008, 18, (4), 5-17.

Sublette, K.; White, D.; Davis, G.; Ogles, D.; Cook, D.; Kolhatkar, R.; Beckmann, D.; Yang, X.Monitoring Subsurface Microbial Ecology in a Sulfate-Amended, Gasoline-Contaminated Aquifer. Groundwater Monitoring & Remediation 2006, 26, (2), 70-78.